Information for 8-GAGATGACTGGCA (Motif 15)

A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T C T A G G T A C G T A C C G T A A C T G A G C T A G T C G C T A A G C T A G T C A G C T A G T C
p-value:1e-8
log p-value:-1.959e+01
Information Content per bp:1.786
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.0 +/- 26.4bp
Average Position of motif in Background52.0 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGATGACTGGCA-
-AGGTGNCAGACAG
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAGATGACTGGCA--
---BTGABTGACAGS
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGATGACTGGCA----
-NGTAGGTTGGCATNNN
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GAGATGACTGGCA--
---NTGATTGACAGN
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGATGACTGGCA
-AGGTGHCAGACA
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GAGATGACTGGCA-
-----GGTTGGCAT
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGATGACTGGCA
GGTGYTGACAGS--
 A C G T A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGATGACTGGCA---
----TGAGTGACAGSC
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GAGATGACTGGCA--
-----VGCTGWCAVB
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAGATGACTGGCA-
-----NGTGGGCAT
 A C T G C T G A C T A G C T G A C G A T C T A G C T G A G T A C C G A T A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T