Information for 1-CKGTTGCCATGGCAAC (Motif 1)

A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C
Reverse Opposite:
C T A G A C G T G A C T C A T G A G T C G A T C C G T A A C G T C T A G C T A G G A T C C T G A T C G A G A T C T G C A T C A G
p-value:1e-134
log p-value:-3.088e+02
Information Content per bp:1.617
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif25.49%
Number of Background Sequences with motif263.0
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets51.0 +/- 20.4bp
Average Position of motif in Background47.4 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:CKGTTGCCATGGCAAC
CGGTTGCCATGGCAAC
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:2
Score:0.98
Offset:1
Orientation:reverse strand
Alignment:CKGTTGCCATGGCAAC
-KGTTGCCATGGCAAC
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C
A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX3/MA0798.1/Jaspar

Match Rank:3
Score:0.96
Offset:1
Orientation:forward strand
Alignment:CKGTTGCCATGGCAAC-
-CGTTGCCATGGCAACG
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C A C G T
A C G T A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:4
Score:0.96
Offset:1
Orientation:forward strand
Alignment:CKGTTGCCATGGCAAC-
-CGTTGCCATGGCAACG
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:5
Score:0.95
Offset:1
Orientation:forward strand
Alignment:CKGTTGCCATGGCAAC-
-CGTTGCCATGGCAACG
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:6
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:CKGTTGCCATGGCAAC-
-CGTTGCCATGGCAACN
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C A C G T
A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:CKGTTGCCATGGCAAC
--GTTGCCATGGNAAC
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.93
Offset:1
Orientation:forward strand
Alignment:CKGTTGCCATGGCAAC
-NGTTGCCATGGCAA-
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.92
Offset:1
Orientation:forward strand
Alignment:CKGTTGCCATGGCAAC
-GGTTGCCATGGCAA-
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CKGTTGCCATGGCAAC
CTGTTGCTAGGS----
 A G T C A C G T C T A G A C G T G A C T C T A G A G T C A G T C G T C A G C A T C T A G C T A G G T A C C T G A T G C A G A T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T A C G T