Information for 5-GATTTTATGA (Motif 9)

T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A
Reverse Opposite:
A C G T A T G C C G T A A G C T C G T A G T C A G T C A C G T A A G C T A G T C
p-value:1e-11
log p-value:-2.542e+01
Information Content per bp:1.835
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif408.9
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets49.4 +/- 27.0bp
Average Position of motif in Background51.5 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GATTTTATGA-
-NTTTTACGAC
 T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GATTTTATGA-
-NTTTTATGAC
 T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GATTTTATGA-----
NAATTTTACGAGNTNN
 A C G T T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:GATTTTATGA--
--TTTTATTRGN
 T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T A C G T
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GATTTTATGA-
-NTTTTACGAC
 T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T
A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GATTTTATGA-
--TTTTATTGC
 T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GATTTTATGA-----
NNNATTTTACGACNNTN
 A C G T A C G T T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GATTTTATGA--
-NTTTTATTACN
 T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T A C G T
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GATTTTATGA---
--TTTTATGGCTN
 T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GATTTTATGA-----
ANATTTTACGAGNNNN
 A C G T T C A G C T G A C G A T C A G T A C G T A C G T T C G A A C G T T A C G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T