Information for 11-CCTGAACAAGAGA (Motif 24)

A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C G T A C G T A C T G A C G T A C G T A G T C C G T A A C T G A C T G
p-value:1e-7
log p-value:-1.759e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.5 +/- 35.9bp
Average Position of motif in Background34.1 +/- 9.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0065.1_Sox15_1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCTGAACAAGAGA---
TAGTGAACAATAGATTT
 A C G T A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTGAACAAGAGA
---GAACAATGGN
 A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0173.1_Sox21_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCTGAACAAGAGA--
NNNNNGAACAATTGANN
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTGAACAAGAGA-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTGAACAAGAGA-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCTGAACAAGAGA---
ATAAGAACAAAGGACTA
 A C G T A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCTGAACAAGAGA
---GAACAATGG-
 A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCTGAACAAGAGA---
TNNAGAACAATANATNN
 A C G T A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCTGAACAAGAGA---
AGAAGAACAAAGGACTA
 A C G T A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCTGAACAAGAGA--
TCACGGAACAATAGGTG
 A C G T A C G T A G T C A G T C A C G T A C T G C G T A C G T A A G T C C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G