Information for 3-AATAGCTAATAAAAVT (Motif 2)

C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T
Reverse Opposite:
C T G A A T C G A C G T C G A T A C G T A C G T C G T A A C G T A C G T C T G A C T A G A T G C C G A T C G T A A C G T A G C T
p-value:1e-18
log p-value:-4.258e+01
Information Content per bp:1.764
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif16.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets49.3 +/- 21.4bp
Average Position of motif in Background48.5 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT--
--CTACCAATAAAATTCT
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T A C G T A C G T
A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.82
Offset:2
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT--
--AACCCAATAAAATTCG
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T A C G T A C G T
A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.82
Offset:5
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT
-----CCAATAAAAA-
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.81
Offset:5
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT
-----CCAATAAAAA-
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.80
Offset:4
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT
----NCYAATAAAA--
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T
A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.80
Offset:5
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT
-----CCAATAAAAC-
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.78
Offset:2
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT---
--AATGCAATAAAATTTAT
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.78
Offset:4
Orientation:reverse strand
Alignment:AATAGCTAATAAAAVT
----CCYMATAAAA--
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.75
Offset:4
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT
----GGTAATAAAAA-
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T
A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.75
Offset:5
Orientation:forward strand
Alignment:AATAGCTAATAAAAVT
-----GCAATAAAA--
 C T G A G T C A G C A T C G T A T A C G A G T C A G C T C G T A C G T A A C G T C G T A C G T A C G T A C G T A T A G C A G C T
A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T