Information for 6-GCTATAAAAC (Motif 15)

T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C
Reverse Opposite:
A C T G A C G T C A G T C G A T G C A T T C G A C G A T C G T A T C A G A G T C
p-value:1e-9
log p-value:-2.213e+01
Information Content per bp:1.654
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif10.57%
Number of Background Sequences with motif2285.8
Percentage of Background Sequences with motif4.67%
Average Position of motif in Targets41.7 +/- 23.9bp
Average Position of motif in Background50.5 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GCTATAAAAC
AAGCCATAAAA-
 A C G T A C G T T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAAAC-
NGYCATAAAWCH
 A C G T T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCTATAAAAC------
-GTATAAAAGGCGGGG
 T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GCTATAAAAC------
-GTATAAAAGGCGGGG
 T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCTATAAAAC
GTCATAAAAN
 T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GCTATAAAAC
GCAATAAAA-
 T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAAAC
NGCAATTAAA-
 A C G T T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCTATAAAAC
CCAATAAAAC
 T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCTATAAAAC
CCAATAAAAA
 T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAAAC
GGTAATAAAAA
 A C G T T C A G A G T C G C A T G C T A A G C T C G T A G C T A G T C A T G C A T G A C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A