Information for 5-KAGACARGRAARC (Motif 9)

A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
Reverse Opposite:
A T C G A G T C A C G T A C G T G A C T A G T C A G T C A C G T A C T G A C G T A G T C A C G T G T A C
p-value:1e-11
log p-value:-2.719e+01
Information Content per bp:1.877
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.7 +/- 22.7bp
Average Position of motif in Background49.0 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mecom/MA0029.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:KAGACARGRAARC-
AAGATAAGATAACA
 A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:KAGACARGRAARC
--NACAGGAAAT-
 A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:KAGACARGRAARC
--NACAGGAAAT-
 A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-KAGACARGRAARC
ANAGATAAGAA---
 A C G T A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:KAGACARGRAARC
-AGAAACGAAAGT
 A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-KAGACARGRAARC
CCAGACAG------
 A C G T A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-KAGACARGRAARC
BCAGACWA------
 A C G T A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:KAGACARGRAARC
TTGACAGG-----
 A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KAGACARGRAARC
-AGATAAGA----
 A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---KAGACARGRAARC
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A A G T C C G T A C T A G A C T G C T G A C G T A C G T A C T A G A T G C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T