Information for 23-CTGGCTGGTTGGT (Motif 46)

G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T
Reverse Opposite:
C G T A T A G C G T A C T G C A T C G A A G T C G T A C G T C A C A T G G T A C A T G C G T C A C A T G
p-value:1e-5
log p-value:-1.244e+01
Information Content per bp:1.763
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif44.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets49.0 +/- 28.2bp
Average Position of motif in Background50.1 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGGCTGGTTGGT-
CTGGCAGNCTGCCA
 G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGGCTGGTTGGT
CTGTCTGG-----
 G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTGGCTGGTTGGT
GTCATGCHTGRCTGS-
 A C G T A C G T A C G T G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCTGGTTGGT
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTGGCTGGTTGGT------
----CTGATTGGTCNATTT
 G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGGCTGGTTGGT---
AGAGTGCTGATTGGTCCA
 A C G T A C G T G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T A C G T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGGCTGGTTGGT
TWGTCTGV-----
 G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTGGCTGGTTGGT--
---CGTGGGTGGTCC
 G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T A C G T A C G T
A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTGGCTGGTTGGT-----
--NGTAGGTTGGCATNNN
 G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCTGGTTGGT
NAGANTGGCGGGGNGNA
 A C G T A C G T A C G T A C G T G T A C A C G T A T C G A C T G G T A C A C G T A C T G C T A G A G C T A C G T A C T G A T C G G A C T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A