Information for 17-TGCCTTCTATTGTTTG (Motif 45)

A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G
Reverse Opposite:
A G T C C G T A C G T A C G T A G T A C G T C A C G T A C G A T C G T A A C T G C G T A C T G A A C T G A C T G A G T C C G T A
p-value:1e-6
log p-value:-1.459e+01
Information Content per bp:1.918
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.2 +/- 29.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.64
Offset:6
Orientation:forward strand
Alignment:TGCCTTCTATTGTTTG
------CCATTGTTC-
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGCCTTCTATTGTTTG----
---CNNNTATTGTTCNNNNN
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0073.1_Sox7_1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTTCTATTGTTTG-----
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.61
Offset:6
Orientation:forward strand
Alignment:TGCCTTCTATTGTTTG
------CCATTGTTYB
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.61
Offset:8
Orientation:forward strand
Alignment:TGCCTTCTATTGTTTG
--------ATTGTTA-
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGCCTTCTATTGTTTG---
----TTCTATTTTTAGNNN
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TGCCTTCTATTGTTTG
-----NCCATTGTTY-
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:8
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TGCCTTCTATTGTTTG-
-----TCTATTTTTAGA
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

MEF2D/MA0773.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TGCCTTCTATTGTTTG-
-----TCTATTTATAGN
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TGCCTTCTATTGTTTG
-----NCCATTGTTC-
 A C G T A C T G G T A C A G T C A G C T A C G T A G T C A C G T C G T A A C G T A C G T A C T G A C G T A C G T C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T