Information for 2-GAATCCATTCTTC (Motif 3)

C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
Reverse Opposite:
T C A G T C G A C T G A T C A G T G C A C G T A A C G T C A T G T C A G T C G A C G A T C A G T G A T C
p-value:1e-13
log p-value:-3.209e+01
Information Content per bp:1.593
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif8.08%
Number of Background Sequences with motif1287.0
Percentage of Background Sequences with motif2.76%
Average Position of motif in Targets48.7 +/- 26.3bp
Average Position of motif in Background51.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAATCCATTCTTC
---NCCATTGTTC
 C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAATCCATTCTTC---
ANNTCCATTGTTCNNN
 C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAATCCATTCTTC-
----CCATTGTTYB
 C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAATCCATTCTTC
AGGGAAGTCATTTCT-
 A C G T A C G T A C G T C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAATCCATTCTTC
---NCCATTGTTY
 C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAATCCATTCTTC
SSAATCCACANN--
 A C G T C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAATCCATTCTTC
GGCAAAAGTCCAATAA--
 A C G T A C G T A C G T A C G T A C G T C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GAATCCATTCTTC
----CCTTTGTT-
 C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GAATCCATTCTTC
----CCATTGTTC
 C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

FOXH1/MA0479.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAATCCATTCTTC
TCCAATCCACA----
 A C G T A C G T C T A G G C T A G C T A A G C T A G T C G T A C T G C A G C A T A C G T A G T C A G C T A G C T A G T C
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T