Information for 12-CAATGATTAAGGA (Motif 17)

A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T A C G T T G C A C G T A A C G T A T G C C G T A A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.414e+01
Information Content per bp:1.938
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 19.7bp
Average Position of motif in Background49.2 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAATGATTAAGGA
GTTAATNATTAA---
 A C G T A C G T A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A
C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAATGATTAAGGA
---TGATTGATGA
 A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

HNF1A/MA0046.2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAATGATTAAGGA
AGTTAATGATTAACT-
 A C G T A C G T A C G T A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T A C G T

HNF1B/MA0153.2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAATGATTAAGGA
GTTAATNATTAAC--
 A C G T A C G T A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A
C T A G A G C T G A C T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G T A C A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAATGATTAAGGA----
-AGTTATTAATGAGGTC
 A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAATGATTAAGGA
-AATAATT-----
 A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A
A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CAATGATTAAGGA-
--ATGATKGATGRC
 A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAATGATTAAGGA
GGTTAAACATTAA---
 A C G T A C G T A C G T A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAATGATTAAGGA--
---TGATTRATGGCY
 A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAATGATTAAGGA
-ACCGATTAG---
 A G T C C G T A C G T A G A C T A T C G C G T A A C G T A C G T C G T A C G T A A C T G A C T G C G T A
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T