Information for 4-TTGAAATAAGHCA (Motif 6)

A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A
Reverse Opposite:
A C G T A C T G C A T G A G T C A C G T A C G T C G T A C G A T A C G T A C G T A G T C C G T A C G T A
p-value:1e-12
log p-value:-2.910e+01
Information Content per bp:1.869
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.9 +/- 32.2bp
Average Position of motif in Background49.9 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTGAAATAAGHCA---
-TGACANARRCCAGRC
 A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A A C G T A C G T A C G T
A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TTGAAATAAGHCA-
-----AAAAGTCAA
 A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TTGAAATAAGHCA-
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAAATAAGHCA
NNNTATTGAATTGNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TTGAAATAAGHCA
ATTTGAATT------
 A C G T A C G T A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTGAAATAAGHCA
---AAYTAGGTCA
 A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PB0171.1_Sox18_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTGAAATAAGHCA
NNNNTGAATTCANNNC
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

TGIF2/MA0797.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTGAAATAAGHCA
-TGACAGCTGTCA
 A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A
A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TTGAAATAAGHCA
CGGTTTCAAA-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TTGAAATAAGHCA
--GAAATGACTCA
 A C G T A C G T A C T G C G T A G T C A G C T A C G A T G T C A C G T A A C T G G A T C A G T C C G T A
A C G T A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A