Information for 1-RTTWAATGTRSTG (Motif 2)

C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G
Reverse Opposite:
G T A C C G T A A T G C A G T C C G T A G A T C C G T A A C G T A C G T C G T A C G T A C G T A A G C T
p-value:1e-12
log p-value:-2.949e+01
Information Content per bp:1.870
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.7 +/- 22.9bp
Average Position of motif in Background35.6 +/- 12.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RTTWAATGTRSTG
-TTTAAT------
 C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--RTTWAATGTRSTG
TAATTCAATGAAGTG
 A C G T A C G T C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

POU6F2/MA0793.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RTTWAATGTRSTG
--NTAATGAGCT-
 C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G
A C G T A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RTTWAATGTRSTG
-TTTAATTGCN--
 C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RTTWAATGTRSTG--
GACGATAATGAGCTTGC
 A C G T A C G T C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RTTWAATGTRSTG--
---NNHTGTGGTTWN
 C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G A C G T A C G T
A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

PH0084.1_Irx3_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---RTTWAATGTRSTG-
NNTATTACATGTANNNT
 A C G T A C G T A C G T C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PB0041.1_Mafb_1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RTTWAATGTRSTG-------
---AAATTTGCTGACTTAGA
 C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:RTTWAATGTRSTG
-NTTAATTAGN--
 C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G
A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--RTTWAATGTRSTG--
GTATCTATTGTTCTTTA
 A C G T A C G T C T G A A C G T A C G T C G A T C G T A C G T A A C G T C A T G A C G T C T A G A T C G C G A T A C T G A C G T A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A