Information for 1-TTGATTTATG (Motif 11)

A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G
Reverse Opposite:
A G T C G T C A A C G T G C T A C G T A C G T A C A G T A G T C C G T A T C G A
p-value:1e-9
log p-value:-2.139e+01
Information Content per bp:1.830
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif297.8
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets50.3 +/- 24.3bp
Average Position of motif in Background49.4 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:TTGATTTATG--
-TGATTTATGGC
 A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T A C G T
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:TTGATTTATG---
-TGATTTATGGCC
 A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T A C G T A C G T
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:TTGATTTATG---
-TGATTTATGGCC
 A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T A C G T A C G T
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:TTGATTTATG-
-TGATTGATGA
 A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TTGATTTATG---
NTGATTTATGGCC
 A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTGATTTATG-
TTTGATTGATGN
 A C G T A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TTGATTTATG---
-TGATTRATGGCY
 A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T A C G T A C G T
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TTGATTTATG--
ATGATKGATGRC
 A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TTGATTTATG---
-DGWTTTATGRCN
 A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T A C G T A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TTGATTTATG---
NNANTGATTGATNTTN
 A C G T A C G T A C G T A G C T C G A T C T A G G T C A G C A T A C G T C G A T C G T A A C G T C T A G A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C