Information for 2-GCCASWGMCARTCWYA (Motif 3)

C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
Reverse Opposite:
A G C T C T G A C G A T A T C G C T G A A G T C A C G T A C T G A C T G A G T C C G T A A T C G G A C T A T C G C T A G G A T C
p-value:1e-12
log p-value:-2.925e+01
Information Content per bp:1.645
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif38.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets40.3 +/- 25.2bp
Average Position of motif in Background48.5 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCCASWGMCARTCWYA
---SCTGTCAVTCAV-
 C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCCASWGMCARTCWYA
---NCTGTCAATCAN-
 C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GCCASWGMCARTCWYA
-------CCAATCAA-
 C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCASWGMCARTCWYA
GCCACACCCA------
 C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCCASWGMCARTCWYA
--ACTAGCCAATCA--
 C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCCASWGMCARTCWYA
-TGAGTGACAGSC---
 C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:7
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GCCASWGMCARTCWYA
ATTGCCTCAGGCAAT----
 A C G T A C G T A C G T C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GCCASWGMCARTCWYA
---CGTGCCAAG----
 C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GCCASWGMCARTCWYA
-----TGCCAA-----
 C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GCCASWGMCARTCWYA
AGGTCANTGACCTN----
 A C G T A C G T C T A G G A T C A T G C C T G A A T G C G C A T C T A G T G A C A G T C T G C A C T A G A G C T A T G C G C T A G A C T C T G A
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T A C G T A C G T A C G T