Information for 6-GCTATTAACC (Motif 21)

A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C G T C G T A C G T A A C G T C G T A A C T G A G T C
p-value:1e-3
log p-value:-8.664e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.0 +/- 0.0bp
Average Position of motif in Background27.0 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCTATTAACC
GGCCATTAAC-
 A C G T A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GCTATTAACC----
NNNNCTGTTAACNNTNN
 A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C G T A C G T A C G T
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

Barhl1/MA0877.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCTATTAACC
NNCAATTANN-
 A C G T A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAACC---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAACC---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCTATTAACC--
ACCGGCAATTAATAAA
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

Nkx2-5/MA0063.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCTATTAACC
-CAATTAA--
 A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C
A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTATTAACC
NGCAATTAAA-
 A C G T A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCTATTAACC
GCAATTAG--
 A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTATTAACC
-YCATTAMC-
 A C T G A G T C A C G T C G T A A C G T A C G T C G T A C G T A A G T C A G T C
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T