Information for 5-GTCAGACTTG (Motif 7)

T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
Reverse Opposite:
A T G C T C G A T G C A C T A G A C G T A T G C C G A T T A C G C G T A A T G C
p-value:1e-12
log p-value:-2.844e+01
Information Content per bp:1.569
Number of Target Sequences with motif151.0
Percentage of Target Sequences with motif17.16%
Number of Background Sequences with motif4247.1
Percentage of Background Sequences with motif9.38%
Average Position of motif in Targets51.2 +/- 27.3bp
Average Position of motif in Background49.8 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GTCAGACTTG
AGGTGHCAGACA--
 A C G T A C G T A C G T A C G T T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GTCAGACTTG
-TCAGTCTT-
 T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGACTTG
VBTGWCAGCB---
 A C G T A C G T A C G T T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTCAGACTTG
AGGTGNCAGACAG-
 A C G T A C G T A C G T A C G T T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTCAGACTTG
-BCAGACWA-
 T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGACTTG
NTGTCAN-----
 A C G T A C G T T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTCAGACTTG-
-CCAGACRSVB
 T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGACTTG
RHTGWCAR-----
 A C G T A C G T A C G T T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGACTTG
ATGCCAGACN--
 A C G T A C G T T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTCAGACTTG
-TCACACCT-
 T A C G G C A T A T G C G C T A T A C G T G C A G A T C A C G T A G C T T A C G
A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T