Information for 1-GCGCCMCCTGGTGGCV (Motif 1)

A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
Reverse Opposite:
A T C G C T A G T A G C A G T C C G T A A T G C G A T C C G T A C A T G C T A G A C G T A C T G A C T G G A T C C T A G T A G C
p-value:1e-93
log p-value:-2.144e+02
Information Content per bp:1.698
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif10.57%
Number of Background Sequences with motif199.7
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets52.1 +/- 20.3bp
Average Position of motif in Background49.9 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.94
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCMCCTGGTGGCV
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCMCCTGGTGGCV-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---GCGCCMCCTGGTGGCV-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCGCCMCCTGGTGGCV
GGTCCCGCCCCCTTCTC---
 A C G T A C G T A C G T A C G T A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCGCCMCCTGGTGGCV
-GGCCYCCTGCTGDGH
 A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCGCCMCCTGGTGGCV
-CACCCCCGGGGGGG-
 A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCGCCMCCTGGTGGCV
---CCCCCTGCTGTG-
 A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCGCCMCCTGGTGGCV
--ACCACCTGTT----
 A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
A C G T A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCGCCMCCTGGTGGCV
--NNCACCTGNN----
 A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCGCCMCCTGGTGGCV
-CCCCCCCGGGGGGGT
 A T C G A G T C C T A G A G T C A G T C T G C A A G T C G A T C C G A T C T A G A T C G G C A T A C T G A T C G G A T C T A G C
A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T