Information for 19-TTTCATGGCACATATT (Motif 35)

A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G T A A C G T A C T G A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A C G T A C G T A
p-value:1e-3
log p-value:-8.006e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTTCATGGCACATATT
TTTTATGGCTN-----
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TTTCATGGCACATATT---
---CGAAGCACACAAAATA
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TTTCATGGCACATATT
NGANTTTTATGGCTCN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTTCATGGCACATATT
NTTTTATGAC-------
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TTTCATGGCACATATT
ACATTCATGACACG----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G A C G T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TTTCATGGCACATATT
----RGGGCACTAACY
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTTCATGGCACATATT
TTTTTATTGC-------
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TTTCATGGCACATATT
ANTAATTTTATGGCCGN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TTTCATGGCACATATT
TTTTATTGC-------
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TTTCATGGCACATATT
TTTAATTGCN------
 A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G T C C G T A A G T C C G T A A C G T C G T A A C G T A C G T
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T