Information for 18-GGTTAAAGAAAGG (Motif 29)

A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A C G T A A G T C A G T C
p-value:1e-3
log p-value:-8.006e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets87.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GGTTAAAGAAAGG-----
----GGAGAAAGGTGCGA
 A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGTTAAAGAAAGG---
AGGTCAACTAAAGGTCA
 A C G T A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGTTAAAGAAAGG
---AAAACAAAGG
 A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GGTTAAAGAAAGG
-----AACAAAGG
 A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PH0167.1_Tcf1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGTTAAAGAAAGG
CCTTAGTTAACTAAAAT
 A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGTTAAAGAAAGG---
AGGTCATGCAAAGGTCA
 A C G T A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

RARA::RXRA/MA0159.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGTTAAAGAAAGG---
AGGTCACGGAGAGGTCA
 A C G T A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGTTAAAGAAAGG----
ATAAGAACAAAGGACTA
 A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Foxj3/MA0851.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGTTAAAGAAAGG-
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGTTAAAGAAAGG-
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T A C T G A C T G A C G T A C G T C G T A C G T A C G T A A C T G C G T A C G T A C G T A A C T G A C T G A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C