Information for 3-RTTAWTCWCG (Motif 22)

C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G
Reverse Opposite:
A G T C A C T G C G T A A C T G G T C A C G T A A C G T G T C A G T C A A G T C
p-value:1e-3
log p-value:-8.656e+00
Information Content per bp:1.773
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif334.8
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets78.5 +/- 26.9bp
Average Position of motif in Background50.7 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0138.1_Irf4_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:RTTAWTCWCG-----
AGTATTCTCGGTTGC
 C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G A C G T A C G T A C G T A C G T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RTTAWTCWCG
-YTAATCCY-
 C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RTTAWTCWCG
CTTAATCCC-
 C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:RTTAWTCWCG
-TTAATCCC-
 C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----RTTAWTCWCG---
GANNATTAATCCCTNNN
 A C G T A C G T A C G T A C G T C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0138.1_Pitx2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----RTTAWTCWCG---
GNNNATTAATCCCTNCN
 A C G T A C G T A C G T A C G T C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PH0124.1_Obox5_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----RTTAWTCWCG---
NANANTTAATCCCNNNN
 A C G T A C G T A C G T A C G T C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RTTAWTCWCG
-TTAATCCT-
 C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G
A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:RTTAWTCWCG
NYTAATCCYB
 C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PB0139.1_Irf5_2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RTTAWTCWCG-----
NNAATTCTCGNTNAN
 C T A G A C G T A C G T C G T A C G A T A C G T A G T C C G A T A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A