Information for 6-TTAGGGMHAAACT (Motif 13)

C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T
Reverse Opposite:
C G T A A C T G A G C T A G C T A C G T C A T G A C T G A G T C A G T C G A T C C G A T C G T A C G T A
p-value:1e-5
log p-value:-1.342e+01
Information Content per bp:1.648
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif26.67%
Number of Background Sequences with motif262.0
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets53.8 +/- 15.6bp
Average Position of motif in Background49.3 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TTAGGGMHAAACT-----
--GGGGTCAAAGTCCAAT
 C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

STAT1/MA0137.3/Jaspar

Match Rank:2
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TTAGGGMHAAACT
TTTCCAGGAAA---
 A C G T C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T
A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TTAGGGMHAAACT
-TRAGGTCA----
 C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.49
Offset:1
Orientation:forward strand
Alignment:TTAGGGMHAAACT---
-AGAGTCCAAAGTCCA
 C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T A C G T A C G T A C G T
A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:TTAGGGMHAAACT--
-TGGGGCAAAGGTCA
 C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T A C G T A C G T
A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.49
Offset:0
Orientation:forward strand
Alignment:TTAGGGMHAAACT---
CANAGNNCAAAGTCCA
 C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T A C G T A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

E2F8/MA0865.1/Jaspar

Match Rank:7
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-TTAGGGMHAAACT
TTTGGCGGGAAA--
 A C G T C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T
C G A T A C G T A G C T A T C G C T A G A T G C A T C G C T A G C T A G G T C A C T G A C G T A A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-TTAGGGMHAAACT
CTTCTGGGAAA---
 A C G T C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T
A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A A C G T A C G T A C G T

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.48
Offset:0
Orientation:forward strand
Alignment:TTAGGGMHAAACT
TTCGCGCGAAAA-
 C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T
A G C T A G C T T A G C A T C G A G T C A C T G A T G C A T C G T C G A C T G A T C G A C T G A A C G T

Stat4/MA0518.1/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-TTAGGGMHAAACT
TTTCCAGGAAATGG
 A C G T C G A T A C G T C G T A C T A G C T A G C T A G T G A C G T A C C G T A T C G A C T G A G T A C A C G T
A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G