Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 915)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46753)	% of Background Sequences with Motif
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-7	-1.806e+01	0.0000	69.0	7.54%	1687.8	3.61%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-6	-1.451e+01	0.0001	20.0	2.19%	264.2	0.56%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-6	-1.384e+01	0.0001	18.0	1.97%	227.6	0.49%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-5	-1.356e+01	0.0001	16.0	1.75%	185.8	0.40%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-5	-1.214e+01	0.0004	79.0	8.63%	2385.8	5.10%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-1.097e+01	0.0010	77.0	8.42%	2387.1	5.10%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-4	-1.053e+01	0.0014	29.0	3.17%	625.3	1.34%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-4	-9.902e+00	0.0023	36.0	3.93%	888.6	1.90%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-8.998e+00	0.0050	26.0	2.84%	582.4	1.24%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.965e+00	0.0050	68.0	7.43%	2172.2	4.64%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-8.961e+00	0.0050	29.0	3.17%	685.7	1.47%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-8.743e+00	0.0050	16.0	1.75%	277.7	0.59%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-8.603e+00	0.0051	30.0	3.28%	735.3	1.57%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-3	-8.502e+00	0.0053	24.0	2.62%	534.4	1.14%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3	-8.487e+00	0.0053	20.0	2.19%	406.0	0.87%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-3	-8.035e+00	0.0074	15.0	1.64%	266.5	0.57%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-7.266e+00	0.0150	26.0	2.84%	654.9	1.40%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-6.447e+00	0.0320	42.0	4.59%	1311.4	2.80%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.446e+00	0.0320	78.0	8.52%	2822.5	6.03%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-6.352e+00	0.0320	54.0	5.90%	1809.8	3.87%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-6.098e+00	0.0390	99.0	10.82%	3790.2	8.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-5.800e+00	0.0501	11.0	1.20%	207.4	0.44%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-5.754e+00	0.0502	178.0	19.45%	7493.7	16.01%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-5.515e+00	0.0610	25.0	2.73%	707.0	1.51%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-5.485e+00	0.0610	107.0	11.69%	4235.3	9.05%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-5.480e+00	0.0610	13.0	1.42%	280.3	0.60%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.393e+00	0.0613	150.0	16.39%	6239.2	13.33%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-2	-5.312e+00	0.0641	29.0	3.17%	874.3	1.87%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.289e+00	0.0641	37.0	4.04%	1196.9	2.56%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-5.259e+00	0.0641	25.0	2.73%	722.9	1.54%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2	-5.176e+00	0.0663	25.0	2.73%	727.3	1.55%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-5.167e+00	0.0663	32.0	3.50%	1003.6	2.14%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.030e+00	0.0721	27.0	2.95%	814.0	1.74%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-4.832e+00	0.0853	100.0	10.93%	4012.1	8.57%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-2	-4.825e+00	0.0853	24.0	2.62%	710.7	1.52%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-4.274e+00	0.1408	39.0	4.26%	1367.5	2.92%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.222e+00	0.1443	32.0	3.50%	1077.3	2.30%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-4.217e+00	0.1443	125.0	13.66%	5278.1	11.28%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-4.057e+00	0.1615	26.0	2.84%	843.9	1.80%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.050e+00	0.1615	68.0	7.43%	2670.2	5.71%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.829e+00	0.1930	16.0	1.75%	461.1	0.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.788e+00	0.1962	25.0	2.73%	823.1	1.76%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.782e+00	0.1962	132.0	14.43%	5695.8	12.17%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.749e+00	0.1962	24.0	2.62%	785.1	1.68%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.694e+00	0.2011	107.0	11.69%	4530.1	9.68%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.661e+00	0.2035	9.0	0.98%	212.4	0.45%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.652e+00	0.2035	21.0	2.30%	670.3	1.43%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.552e+00	0.2173	60.0	6.56%	2378.8	5.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.521e+00	0.2196	5.0	0.55%	87.2	0.19%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.521e+00	0.2196	73.0	7.98%	2977.4	6.36%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-3.508e+00	0.2196	20.0	2.19%	640.5	1.37%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-3.486e+00	0.2196	76.0	8.31%	3121.8	6.67%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-3.439e+00	0.2205	5.0	0.55%	89.3	0.19%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-3.347e+00	0.2372	23.0	2.51%	776.9	1.66%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.344e+00	0.2372	50.0	5.46%	1955.0	4.18%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.308e+00	0.2378	39.0	4.26%	1469.9	3.14%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.300e+00	0.2378	25.0	2.73%	864.9	1.85%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-3.291e+00	0.2378	39.0	4.26%	1471.4	3.14%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.266e+00	0.2378	35.0	3.83%	1298.2	2.77%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.247e+00	0.2378	21.0	2.30%	701.8	1.50%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-3.143e+00	0.2575	47.0	5.14%	1847.9	3.95%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.131e+00	0.2575	28.0	3.06%	1008.3	2.15%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.067e+00	0.2691	51.0	5.57%	2039.5	4.36%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.041e+00	0.2718	15.0	1.64%	472.0	1.01%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.006e+00	0.2772	47.0	5.14%	1866.9	3.99%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.948e+00	0.2892	8.0	0.87%	206.0	0.44%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-2.875e+00	0.3064	14.0	1.53%	442.6	0.95%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.845e+00	0.3112	10.0	1.09%	287.0	0.61%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.829e+00	0.3116	12.0	1.31%	366.0	0.78%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.828e+00	0.3116	2.0	0.22%	20.1	0.04%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.773e+00	0.3202	15.0	1.64%	490.4	1.05%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.763e+00	0.3202	33.0	3.61%	1268.6	2.71%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.757e+00	0.3202	44.0	4.81%	1765.4	3.77%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.756e+00	0.3202	156.0	17.05%	7098.6	15.17%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.734e+00	0.3202	38.0	4.15%	1496.7	3.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.689e+00	0.3254	9.0	0.98%	256.0	0.55%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-2.681e+00	0.3254	168.0	18.36%	7706.9	16.47%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.654e+00	0.3284	15.0	1.64%	499.2	1.07%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.627e+00	0.3332	39.0	4.26%	1556.4	3.33%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.615e+00	0.3332	10.0	1.09%	299.4	0.64%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.587e+00	0.3381	1.0	0.11%	4.2	0.01%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.578e+00	0.3381	17.0	1.86%	589.9	1.26%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.528e+00	0.3501	18.0	1.97%	636.5	1.36%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-2.438e+00	0.3786	75.0	8.20%	3269.6	6.99%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.363e+00	0.4030	62.0	6.78%	2668.1	5.70%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-2.360e+00	0.4030	29.0	3.17%	1139.8	2.44%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.346e+00	0.4030	15.0	1.64%	524.6	1.12%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.341e+00	0.4030	96.0	10.49%	4297.6	9.18%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.253e+00	0.4297	7.0	0.77%	202.5	0.43%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.237e+00	0.4320	92.0	10.05%	4130.1	8.83%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.216e+00	0.4363	7.0	0.77%	204.7	0.44%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.143e+00	0.4643	23.0	2.51%	896.0	1.91%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.131e+00	0.4646	90.0	9.84%	4060.7	8.68%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.128e+00	0.4646	38.0	4.15%	1585.4	3.39%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.119e+00	0.4646	16.0	1.75%	588.0	1.26%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.115e+00	0.4646	26.0	2.84%	1035.6	2.21%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.088e+00	0.4649	2.0	0.22%	31.6	0.07%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.083e+00	0.4649	4.0	0.44%	97.8	0.21%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.060e+00	0.4684	3.0	0.33%	64.0	0.14%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.055e+00	0.4684	34.0	3.72%	1411.6	3.02%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.043e+00	0.4684	29.0	3.17%	1182.9	2.53%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.023e+00	0.4721	113.0	12.35%	5209.8	11.13%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.019e+00	0.4721	16.0	1.75%	598.3	1.28%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.012e+00	0.4721	39.0	4.26%	1651.0	3.53%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.990e+00	0.4740	23.0	2.51%	915.5	1.96%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.985e+00	0.4740	21.0	2.30%	825.6	1.76%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.942e+00	0.4878	30.0	3.28%	1243.5	2.66%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.935e+00	0.4878	9.0	0.98%	303.1	0.65%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.932e+00	0.4878	22.0	2.40%	877.2	1.87%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.910e+00	0.4902	8.0	0.87%	263.7	0.56%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.910e+00	0.4902	30.0	3.28%	1248.4	2.67%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.809e+00	0.5322	19.0	2.08%	756.8	1.62%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.797e+00	0.5340	70.0	7.65%	3177.1	6.79%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.756e+00	0.5516	8.0	0.87%	274.0	0.59%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.755e+00	0.5516	42.0	4.59%	1840.1	3.93%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.718e+00	0.5631	23.0	2.51%	952.6	2.04%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.718e+00	0.5631	44.0	4.81%	1943.8	4.15%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.707e+00	0.5631	19.0	2.08%	769.2	1.64%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.693e+00	0.5631	21.0	2.30%	863.7	1.85%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.639e+00	0.5889	8.0	0.87%	283.7	0.61%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.619e+00	0.5959	70.0	7.65%	3224.3	6.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.611e+00	0.5959	5.0	0.55%	158.8	0.34%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.541e+00	0.6336	198.0	21.64%	9607.8	20.53%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.534e+00	0.6336	52.0	5.68%	2370.2	5.07%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.533e+00	0.6336	74.0	8.09%	3444.7	7.36%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.528e+00	0.6336	5.0	0.55%	163.0	0.35%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.526e+00	0.6336	3.0	0.33%	82.2	0.18%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.498e+00	0.6361	11.0	1.20%	429.5	0.92%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.469e+00	0.6497	16.0	1.75%	662.4	1.42%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.452e+00	0.6556	54.0	5.90%	2488.8	5.32%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.427e+00	0.6672	85.0	9.29%	4019.5	8.59%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.415e+00	0.6699	34.0	3.72%	1526.4	3.26%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.394e+00	0.6792	157.0	17.16%	7618.0	16.28%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.391e+00	0.6792	2.0	0.22%	49.7	0.11%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.389e+00	0.6792	71.0	7.76%	3340.8	7.14%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.365e+00	0.6832	9.0	0.98%	352.8	0.75%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.351e+00	0.6882	25.0	2.73%	1106.6	2.36%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.340e+00	0.6906	34.0	3.72%	1542.9	3.30%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.336e+00	0.6906	36.0	3.93%	1640.4	3.51%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.313e+00	0.6995	3.0	0.33%	92.4	0.20%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.297e+00	0.7055	25.0	2.73%	1116.2	2.39%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.295e+00	0.7055	88.0	9.62%	4213.8	9.01%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.290e+00	0.7055	92.0	10.05%	4414.6	9.43%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.290e+00	0.7055	121.0	13.22%	5861.9	12.53%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.275e+00	0.7055	45.0	4.92%	2094.5	4.48%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.265e+00	0.7055	16.0	1.75%	691.3	1.48%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.264e+00	0.7055	125.0	13.66%	6072.3	12.98%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.263e+00	0.7055	1.0	0.11%	17.2	0.04%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.251e+00	0.7055	8.0	0.87%	318.2	0.68%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.243e+00	0.7055	77.0	8.42%	3685.3	7.88%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.215e+00	0.7150	52.0	5.68%	2455.6	5.25%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.215e+00	0.7150	1.0	0.11%	18.1	0.04%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.207e+00	0.7150	2.0	0.22%	56.7	0.12%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.199e+00	0.7150	9.0	0.98%	371.0	0.79%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.181e+00	0.7210	148.0	16.17%	7265.2	15.53%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.160e+00	0.7315	2.0	0.22%	58.4	0.12%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.088e+00	0.7814	6.0	0.66%	242.6	0.52%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.078e+00	0.7838	84.0	9.18%	4096.1	8.75%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.050e+00	0.8010	5.0	0.55%	199.6	0.43%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.958e-01	0.8404	3.0	0.33%	111.8	0.24%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-9.945e-01	0.8404	2.0	0.22%	66.4	0.14%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.909e-01	0.8404	14.0	1.53%	639.8	1.37%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-9.891e-01	0.8404	33.0	3.61%	1578.9	3.37%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-9.854e-01	0.8404	33.0	3.61%	1579.8	3.38%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-9.587e-01	0.8457	16.0	1.75%	743.0	1.59%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-9.506e-01	0.8475	48.0	5.25%	2340.0	5.00%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-9.454e-01	0.8475	86.0	9.40%	4253.7	9.09%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-9.404e-01	0.8475	81.0	8.85%	4003.8	8.56%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-9.287e-01	0.8510	69.0	7.54%	3403.2	7.27%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.268e-01	0.8510	5.0	0.55%	211.3	0.45%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-9.263e-01	0.8510	12.0	1.31%	552.2	1.18%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.977e-01	0.8624	16.0	1.75%	755.5	1.61%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-8.919e-01	0.8624	9.0	0.98%	410.2	0.88%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.853e-01	0.8631	85.0	9.29%	4230.3	9.04%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.838e-01	0.8631	26.0	2.84%	1257.7	2.69%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-8.838e-01	0.8631	26.0	2.84%	1257.7	2.69%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.762e-01	0.8631	3.0	0.33%	120.5	0.26%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.762e-01	0.8631	3.0	0.33%	120.5	0.26%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.720e-01	0.8631	58.0	6.34%	2871.4	6.14%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.639e-01	0.8631	3.0	0.33%	121.5	0.26%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.607e-01	0.8631	6.0	0.66%	267.4	0.57%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.372e-01	0.8658	1.0	0.11%	29.4	0.06%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.342e-01	0.8658	73.0	7.98%	3646.6	7.79%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-8.333e-01	0.8658	37.0	4.04%	1825.5	3.90%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.301e-01	0.8658	83.0	9.07%	4155.2	8.88%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-8.150e-01	0.8662	29.0	3.17%	1427.4	3.05%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-8.049e-01	0.8704	222.0	24.26%	11244.2	24.03%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-8.020e-01	0.8704	15.0	1.64%	725.8	1.55%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.877e-01	0.8761	35.0	3.83%	1740.0	3.72%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.864e-01	0.8761	14.0	1.53%	679.0	1.45%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.758e-01	0.8773	6.0	0.66%	278.7	0.60%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.538e-01	0.8921	14.0	1.53%	685.9	1.47%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.435e-01	0.8967	29.0	3.17%	1449.9	3.10%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.427e-01	0.8967	122.0	13.33%	6188.1	13.22%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.137e-01	0.9143	47.0	5.14%	2377.6	5.08%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.132e-01	0.9143	40.0	4.37%	2020.5	4.32%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.114e-01	0.9143	7.0	0.77%	338.2	0.72%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.074e-01	0.9143	4.0	0.44%	186.2	0.40%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.033e-01	0.9143	100.0	10.93%	5089.2	10.88%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.001e-01	0.9143	81.0	8.85%	4120.4	8.81%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.962e-01	0.9143	62.0	6.78%	3151.6	6.74%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.868e-01	0.9143	7.0	0.77%	342.5	0.73%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.837e-01	0.9143	25.0	2.73%	1264.5	2.70%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-6.822e-01	0.9143	1.0	0.11%	36.7	0.08%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.822e-01	0.9143	1.0	0.11%	36.6	0.08%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.817e-01	0.9143	12.0	1.31%	599.7	1.28%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.815e-01	0.9143	49.0	5.36%	2493.0	5.33%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.788e-01	0.9143	59.0	6.45%	3006.3	6.42%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.667e-01	0.9143	2.0	0.22%	88.5	0.19%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.666e-01	0.9143	55.0	6.01%	2807.2	6.00%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.663e-01	0.9143	6.0	0.66%	294.6	0.63%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.551e-01	0.9143	2.0	0.22%	89.5	0.19%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.454e-01	0.9143	10.0	1.09%	504.0	1.08%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.423e-01	0.9143	9.0	0.98%	453.3	0.97%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-6.403e-01	0.9143	56.0	6.12%	2871.2	6.14%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.400e-01	0.9143	144.0	15.74%	7383.2	15.78%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-6.369e-01	0.9143	66.0	7.21%	3386.2	7.24%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-6.262e-01	0.9143	3.0	0.33%	144.4	0.31%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.217e-01	0.9143	15.0	1.64%	768.2	1.64%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.217e-01	0.9143	26.0	2.84%	1336.5	2.86%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-6.206e-01	0.9143	12.0	1.31%	613.2	1.31%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.178e-01	0.9143	9.0	0.98%	458.3	0.98%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.142e-01	0.9143	19.0	2.08%	977.9	2.09%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.127e-01	0.9143	29.0	3.17%	1494.9	3.19%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.108e-01	0.9143	44.0	4.81%	2269.0	4.85%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.954e-01	0.9143	17.0	1.86%	879.2	1.88%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-5.949e-01	0.9143	1.0	0.11%	41.6	0.09%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.900e-01	0.9143	2.0	0.22%	95.7	0.20%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.843e-01	0.9143	28.0	3.06%	1453.1	3.11%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-5.825e-01	0.9143	6.0	0.66%	308.4	0.66%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.786e-01	0.9143	17.0	1.86%	884.4	1.89%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.659e-01	0.9143	18.0	1.97%	940.1	2.01%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-5.544e-01	0.9143	8.0	0.87%	419.8	0.90%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.452e-01	0.9143	7.0	0.77%	368.1	0.79%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.409e-01	0.9143	28.0	3.06%	1470.2	3.14%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.319e-01	0.9143	4.0	0.44%	210.0	0.45%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.198e-01	0.9143	10.0	1.09%	533.9	1.14%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-5.132e-01	0.9155	4.0	0.44%	213.1	0.46%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.119e-01	0.9155	77.0	8.42%	4028.0	8.61%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.119e-01	0.9155	7.0	0.77%	375.7	0.80%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-5.042e-01	0.9155	19.0	2.08%	1013.4	2.17%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.961e-01	0.9158	57.0	6.23%	3001.6	6.41%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-4.912e-01	0.9166	56.0	6.12%	2952.7	6.31%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-4.835e-01	0.9198	1.0	0.11%	49.6	0.11%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.807e-01	0.9198	73.0	7.98%	3842.6	8.21%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.720e-01	0.9229	4.0	0.44%	220.1	0.47%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.716e-01	0.9229	1.0	0.11%	50.7	0.11%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.625e-01	0.9243	30.0	3.28%	1609.1	3.44%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.609e-01	0.9243	4.0	0.44%	222.6	0.48%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.590e-01	0.9243	7.0	0.77%	388.0	0.83%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.525e-01	0.9243	11.0	1.20%	606.0	1.29%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.487e-01	0.9243	1.0	0.11%	53.0	0.11%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.433e-01	0.9243	6.0	0.66%	336.2	0.72%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.415e-01	0.9243	17.0	1.86%	930.0	1.99%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.404e-01	0.9243	56.0	6.12%	2984.2	6.38%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-4.403e-01	0.9243	94.0	10.27%	4963.7	10.61%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.329e-01	0.9243	11.0	1.20%	611.1	1.31%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.173e-01	0.9295	109.0	11.91%	5762.5	12.31%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.137e-01	0.9295	4.0	0.44%	231.9	0.50%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.920e-01	0.9460	2.0	0.22%	119.8	0.26%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.851e-01	0.9488	20.0	2.19%	1114.6	2.38%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.791e-01	0.9510	2.0	0.22%	121.4	0.26%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.784e-01	0.9510	11.0	1.20%	629.9	1.35%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.764e-01	0.9510	43.0	4.70%	2343.4	5.01%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.761e-01	0.9510	15.0	1.64%	848.2	1.81%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.742e-01	0.9510	16.0	1.75%	903.9	1.93%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.722e-01	0.9510	5.0	0.55%	297.0	0.63%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.697e-01	0.9510	65.0	7.10%	3507.7	7.50%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.679e-01	0.9510	7.0	0.77%	411.1	0.88%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.668e-01	0.9510	4.0	0.44%	241.4	0.52%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.627e-01	0.9510	14.0	1.53%	799.1	1.71%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.460e-01	0.9510	27.0	2.95%	1510.7	3.23%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.412e-01	0.9510	14.0	1.53%	808.6	1.73%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-3.387e-01	0.9510	6.0	0.66%	363.3	0.78%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.314e-01	0.9510	32.0	3.50%	1787.3	3.82%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.311e-01	0.9510	9.0	0.98%	535.0	1.14%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.229e-01	0.9514	5.0	0.55%	311.0	0.66%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.100e-01	0.9604	45.0	4.92%	2497.7	5.34%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.052e-01	0.9615	3.0	0.33%	196.7	0.42%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.882e-01	0.9745	48.0	5.25%	2675.7	5.72%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.869e-01	0.9745	14.0	1.53%	833.0	1.78%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.821e-01	0.9745	6.0	0.66%	381.9	0.82%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.541e-01	0.9976	7.0	0.77%	450.3	0.96%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.503e-01	0.9979	2.0	0.22%	146.0	0.31%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.496e-01	0.9979	22.0	2.40%	1298.2	2.77%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.486e-01	0.9979	166.0	18.14%	8935.9	19.10%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.483e-01	0.9979	4.0	0.44%	273.3	0.58%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.450e-01	0.9979	1.0	0.11%	78.5	0.17%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.278e-01	1.0000	4.0	0.44%	280.9	0.60%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.198e-01	1.0000	44.0	4.81%	2525.0	5.40%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.030e-01	1.0000	35.0	3.83%	2051.3	4.38%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.947e-01	1.0000	25.0	2.73%	1507.3	3.22%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.923e-01	1.0000	2.0	0.22%	162.3	0.35%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.916e-01	1.0000	21.0	2.30%	1286.8	2.75%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.885e-01	1.0000	1.0	0.11%	90.0	0.19%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.874e-01	1.0000	7.0	0.77%	481.8	1.03%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.831e-01	1.0000	74.0	8.09%	4185.7	8.95%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.767e-01	1.0000	1.0	0.11%	94.0	0.20%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.731e-01	1.0000	4.0	0.44%	302.8	0.65%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.657e-01	1.0000	1.0	0.11%	96.2	0.21%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.597e-01	1.0000	45.0	4.92%	2649.6	5.66%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.553e-01	1.0000	2.0	0.22%	175.3	0.37%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.540e-01	1.0000	3.0	0.33%	245.9	0.53%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.533e-01	1.0000	6.0	0.66%	439.9	0.94%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.524e-01	1.0000	12.0	1.31%	802.7	1.72%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.480e-01	1.0000	59.0	6.45%	3430.9	7.33%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.479e-01	1.0000	2.0	0.22%	178.2	0.38%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.394e-01	1.0000	13.0	1.42%	872.1	1.86%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.375e-01	1.0000	3.0	0.33%	253.7	0.54%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.337e-01	1.0000	3.0	0.33%	255.8	0.55%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.223e-01	1.0000	61.0	6.67%	3585.0	7.66%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.175e-01	1.0000	2.0	0.22%	192.6	0.41%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.137e-01	1.0000	2.0	0.22%	195.0	0.42%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.117e-01	1.0000	5.0	0.55%	403.1	0.86%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.091e-01	1.0000	5.0	0.55%	405.9	0.87%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.087e-01	1.0000	19.0	2.08%	1257.5	2.69%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.082e-01	1.0000	2.0	0.22%	197.0	0.42%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.037e-01	1.0000	18.0	1.97%	1205.2	2.58%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.031e-01	1.0000	11.0	1.20%	788.5	1.69%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.871e-02	1.0000	4.0	0.44%	346.4	0.74%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.351e-02	1.0000	11.0	1.20%	799.6	1.71%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.236e-02	1.0000	1.0	0.11%	124.5	0.27%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-9.043e-02	1.0000	12.0	1.31%	864.2	1.85%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-8.386e-02	1.0000	8.0	0.87%	623.9	1.33%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.863e-02	1.0000	3.0	0.33%	292.5	0.63%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-7.841e-02	1.0000	1.0	0.11%	132.9	0.28%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.527e-02	1.0000	11.0	1.20%	823.7	1.76%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.402e-02	1.0000	2.0	0.22%	220.1	0.47%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.329e-02	1.0000	17.0	1.86%	1192.1	2.55%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.326e-02	1.0000	12.0	1.31%	888.5	1.90%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.941e-02	1.0000	17.0	1.86%	1199.6	2.56%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.367e-02	1.0000	17.0	1.86%	1210.6	2.59%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.971e-02	1.0000	7.0	0.77%	590.0	1.26%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-5.676e-02	1.0000	38.0	4.15%	2456.5	5.25%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.554e-02	1.0000	1.0	0.11%	149.5	0.32%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.475e-02	1.0000	8.0	0.87%	665.0	1.42%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.108e-02	1.0000	9.0	0.98%	736.3	1.57%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.989e-02	1.0000	5.0	0.55%	469.8	1.00%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.627e-02	1.0000	5.0	0.55%	475.7	1.02%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.856e-02	1.0000	6.0	0.66%	560.9	1.20%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-3.823e-02	1.0000	9.0	0.98%	764.7	1.63%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.649e-02	1.0000	1.0	0.11%	186.7	0.40%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.162e-02	1.0000	14.0	1.53%	1148.1	2.45%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.844e-02	1.0000	18.0	1.97%	1421.6	3.04%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.586e-02	1.0000	3.0	0.33%	399.1	0.85%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.171e-03	1.0000	35.0	3.83%	2611.3	5.58%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.931e-03	1.0000	17.0	1.86%	1592.0	3.40%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.870e-04	1.0000	3.0	0.33%	594.9	1.27%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-5.070e-04	1.0000	90.0	9.84%	6241.3	13.34%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	46.8	0.10%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	73.6	0.16%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	16.4	0.04%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	28.4	0.06%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	41.5	0.09%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	10.4	0.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	4.7	0.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	12.9	0.03%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	0.000e+00	1.0000	0.0	0.00%	244.6	0.52%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	18.7	0.04%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	13.3	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.00%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	47.6	0.10%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	40.7	0.09%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.00%