Information for 2-CSSGMYCKTGYTGKYC (Motif 5)

A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C
Reverse Opposite:
A C T G C T G A G T C A G T A C C G T A C T A G A G T C C G T A G T C A A C T G T C G A A C G T A G T C A T G C A T G C A C T G
p-value:1e-9
log p-value:-2.175e+01
Information Content per bp:1.803
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.6 +/- 32.8bp
Average Position of motif in Background62.2 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CSSGMYCKTGYTGKYC
-GGCCYCCTGCTGDGH
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CSSGMYCKTGYTGKYC
---CCCCCTGCTGTG-
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CSSGMYCKTGYTGKYC--
---NNTCCTGCTGTGNNN
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CSSGMYCKTGYTGKYC
-VAGRACAKWCTGTYC
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C
A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CSSGMYCKTGYTGKYC
------CCTGCTGAGH
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CSSGMYCKTGYTGKYC
-VAGRACAKNCTGTBC
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CSSGMYCKTGYTGKYC-
-NAGNACANNNTGTNCT
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C A C G T
A C G T T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CSSGMYCKTGYTGKYC--
--AGNACAGNCTGTTCTN
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C A C G T A C G T
A C G T A C G T C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CSSGMYCKTGYTGKYC
BNTGDCCTTG------
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CSSGMYCKTGYTGKYC--
---TCNCCTGCTGNGNNN
 A G T C A T C G A T C G A C T G T G C A A G C T A G T C A C G T A C G T A C T G A G T C A C G T A C T G A C G T A G C T A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G