Information for 1-TACACYCKTYAAA (Motif 1)

A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T T C A G C G T A T G C A A C T G C T G A A C T G A C G T A T C G A C G T C G T A
p-value:1e-13
log p-value:-3.005e+01
Information Content per bp:1.883
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 12.4bp
Average Position of motif in Background32.6 +/- 4.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TACACYCKTYAAA-
---GCTCGTAAAAA
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TACACYCKTYAAA---
AAACCTCGTAAAATTT
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TACACYCKTYAAA---
AAAGCTCGTAAAATTT
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TACACYCKTYAAA-
---AGTCGTAAAAA
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TACACYCKTYAAA---
TAAAGTCGTAAAACAT
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TACACYCKTYAAA--
---GGTCGTAAAATT
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TACACYCKTYAAA-
----GTCGTAAAAT
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TACACYCKTYAAA-
---GGTCGTAAAAT
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TACACYCKTYAAA
---NCYAATAAAA
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A
A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TACACYCKTYAAA---
TAAAGTCGTAAAATAG
 A C G T C G T A A T G C C G T A A G T C A G C T A G T C A C G T A C G T A G C T C G T A C G T A C G T A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G