Information for 4-ATTGCCAAGG (Motif 11)

C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G
Reverse Opposite:
G T A C A G T C A G C T C G A T A C T G C T A G G T A C T C G A T G C A A C G T
p-value:1e-9
log p-value:-2.237e+01
Information Content per bp:1.833
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif124.0
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets49.8 +/- 21.7bp
Average Position of motif in Background46.9 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:ATTGCCAAGG
-TTGCCAAG-
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATTGCCAAGG
GGTGCCAAGT
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATTGCCAAGG
CGTGCCAAG-
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:ATTGCCAAGG
--TGCCAA--
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATTGCCAAGG----
GTTGCCATGGNAAC
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATTGCCAAGG-----
-TTGCCATGGCAACN
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATTGCCAAGG--
--TGCCCAGNHW
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G A C G T A C G T
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ATTGCCAAGG---
---NTCAAGGTCA
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATTGCCAAGG--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

EBF1/MA0154.3/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATTGCCAAGG----
ATTCCCAAGGGAAT
 C G T A A C G T A G C T A C T G A G T C G T A C G C T A C T G A C T A G A C T G A C G T A C G T A C G T A C G T
C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T