Information for 5-CAGCCAAACT (Motif 7)

T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
Reverse Opposite:
C G T A T C A G C G A T G A C T A G C T C T A G C A T G A G T C C G A T A T C G
p-value:1e-11
log p-value:-2.698e+01
Information Content per bp:1.650
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif11.53%
Number of Background Sequences with motif2594.6
Percentage of Background Sequences with motif5.50%
Average Position of motif in Targets50.6 +/- 25.7bp
Average Position of motif in Background50.5 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAAACT
BCAGACWA---
 A C G T T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAGCCAAACT
-TGCCAA---
 T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAACT
CGTGCCAAG--
 A C G T T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGCCAAACT
CAGCC-----
 T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAAACT
ACTAGCCAATCA
 A C G T A C G T T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

E2F8/MA0865.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAGCCAAACT
TTTCCCGCCAAA--
 A C G T A C G T A C G T A C G T T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAAACT----
SCAGYCADGCATGAC
 A C G T T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAACT
GGTGCCAAGT-
 A C G T T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCAAACT
CACAGN------
 A C G T A C G T T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCAAACT
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T A C G T T A G C G C T A T A C G G T A C G A T C T C G A C T G A G C T A A G T C G C A T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C