Information for 2-GCMGCCAYYKTKC (Motif 2)

A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
Reverse Opposite:
A C T G G T A C C T G A G T C A T C A G C T G A A C G T A C T G A C T G T G A C C A T G A C T G A G T C
p-value:1e-15
log p-value:-3.468e+01
Information Content per bp:1.713
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif150.1
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets48.1 +/- 25.9bp
Average Position of motif in Background50.6 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GCMGCCAYYKTKC
GCCGCCATCTTG-
 A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GCMGCCAYYKTKC
GCNGCCATCTTG-
 A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCMGCCAYYKTKC
GTCCGCCATTA---
 A C G T A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GCMGCCAYYKTKC
TACGCCCCGCCACTCTG-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCMGCCAYYKTKC
CCTTCGGCGCCAAAAGG-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCMGCCAYYKTKC
---NCCATTGTTC
 A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

E2F2/MA0864.1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCMGCCAYYKTKC
AAAATGGCGCCATTTT--
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCMGCCAYYKTKC
----CCTTTGTT-
 A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCMGCCAYYKTKC
--TGCCAA-----
 A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCMGCCAYYKTKC
AGCTCGGCGCCAAAAGC-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C G T A C A C T G A G T C A G T C C G T A G A C T A G T C A C G T A G C T C A T G G T A C
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T