Information for 12-GAGGTTATAA (Motif 16)

T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A
Reverse Opposite:
A G C T A G C T C T G A C G A T T C G A G T C A A G T C A G T C A C G T A T G C
p-value:1e-9
log p-value:-2.125e+01
Information Content per bp:1.840
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif51.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets49.3 +/- 25.8bp
Average Position of motif in Background55.1 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GAGGTTATAA-
-AGGTGTTAAT
 T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A A C G T
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

PH0012.1_Cdx1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGGTTATAA-----
TAAGGTAATAAAATTA
 A C G T T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A A C G T A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAGGTTATAA
TRAGGTCA---
 A C G T T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAGGTTATAA
AGRGGTCA---
 A C G T T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAGGTTATAA-----
AAAGGTAATAAAATTT
 A C G T T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A A C G T A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0073.1_Hoxc9/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGGTTATAA-----
GGAGGTCATTAATTAT
 A C G T T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A A C G T A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAGGTTATAA-
AAGGATATNTN
 T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A A C G T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGGTTATAA
-AGGTCA---
 T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGGTTATAA--------
GAGGTCAAAAGGTCAATG
 T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGGTTATAA
TCAAGGTCAT--
 A C G T A C G T T A C G C G T A A C T G A C T G A C G T A G C T C G T A A G C T T C G A C T G A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T