Information for 4-CACGGGTTTG (Motif 12)

A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
Reverse Opposite:
G A T C C T G A C G T A C G T A A G T C A G T C G T A C A C T G G A C T A T C G
p-value:1e-9
log p-value:-2.301e+01
Information Content per bp:1.841
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif46.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets58.2 +/- 22.1bp
Average Position of motif in Background41.4 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CACGGGTTTG
AACACGTGTT--
 A C G T A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CACGGGTTTG
NAAACCGGTTTT
 A C G T A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T

TFCP2/MA0145.3/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CACGGGTTTG
AAACCGGTTT-
 A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CACGGGTTTG
GCACGTGT---
 A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T A C G T

MAX/MA0058.3/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CACGGGTTTG
NNCACGTGGT--
 A C G T A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
C T G A T A C G T G A C C T G A A G T C T C A G G A C T A C T G A C T G A C G T A C G T A C G T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACGGGTTTG
CACGTGNT--
 A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CACGGGTTTG
NGCACGTGNT--
 A C G T A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CACGGGTTTG
GGCACGTGTC--
 A C G T A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CACGGGTTTG
GGCACGCGTC--
 A C G T A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CACGGGTTTG
ACCACGTGGTNN
 A C G T A C G T A T G C C T G A T G A C A C T G C T A G A C T G A C G T A C G T A G C T C A T G
T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A G T C G C A T