Information for 4-CAGAACAGGGACC (Motif 7)

A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C
Reverse Opposite:
A C T G A T C G A C G T A G T C A G T C A G T C C G A T A C T G A G C T A C G T A G T C A C G T A C T G
p-value:1e-9
log p-value:-2.189e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.8 +/- 19.6bp
Average Position of motif in Background57.8 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGAACAGGGACC
CACAGCAGGGGG-
 A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGAACAGGGACC-
DCHCAGCAGGRGGCC
 A C G T A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAGAACAGGGACC
---AACAGGAAGT
 A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C
A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CAGAACAGGGACC
AACACCAAAACAAAGGA-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAGAACAGGGACC
---NACAGGAAAT
 A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C
A C G T A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CAGAACAGGGACC
-------CGGAGC
 A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CAGAACAGGGACC--
-AGGTCANTGACCTN
 A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C A C G T A C G T
A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CAGAACAGGGACC
---ANCAGGATGT
 A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C
A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CAGAACAGGGACC
CCAGGAACAG-----
 A C G T A C G T A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CAGAACAGGGACC-
----ACAGGAAGTG
 A G T C C G T A C T A G C G T A C T G A A G T C C G T A A C T G A C T G A C T G C G T A A T G C A G T C A C G T
A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G