Information for 9-GTCTTCCAAC (Motif 15)

A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A T C G C T A G C G T A C G T A A C T G C G T A A G T C
p-value:1e-6
log p-value:-1.519e+01
Information Content per bp:1.923
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif15.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.0 +/- 19.6bp
Average Position of motif in Background58.0 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFATC2/MA0152.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTCTTCCAAC
-TTTTCCA--
 A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C
A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTCTTCCAAC-
TGTCTGDCACCT
 A C G T A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTCTTCCAAC-
CTGTCTGTCACCT
 A C G T A C G T A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTCTTCCAAC
-GCTTCC---
 A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C
A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

Atf3/MA0605.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTCTTCCAAC
ACGTCATC----
 A C G T A C G T A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C
C T G A G A T C A C T G A C G T G T A C C G T A A G C T A T G C A C G T A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCTTCCAAC---
---TTGCAACATN
 A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTCTTCCAAC
GTCATN----
 A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GTCTTCCAAC--
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTCTTCCAAC--
GYCATCMATCAT
 A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GTCTTCCAAC
---TGCCAA-
 A C T G A C G T A G T C C G A T A C G T A G T C A T G C C G T A C G T A A G T C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T