Information for 12-GGCTGTCTAG (Motif 29)

A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G
Reverse Opposite:
A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C T G A G T C A G T C
p-value:1e-3
log p-value:-9.183e+00
Information Content per bp:1.945
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif13.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.3 +/- 21.1bp
Average Position of motif in Background38.5 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GGCTGTCTAG
--CTGTCTGG
 A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GGCTGTCTAG---
---TGTCTAGACG
 A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GGCTGTCTAG
-GCTGTCAA-
 A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGCTGTCTAG
VBSYGTCTGG
 A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGTCTAG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGCTGTCTAG
-GCTGTG---
 A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGCTGTCTAG
-CCTGTCAA-
 A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGCTGTCTAG
--TWGTCTGV
 A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCTGTCTAG
NGCTN-----
 A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTCTAG--
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T A C T G A C G T A G T C A C G T G T C A C T A G A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T