Information for 5-YTATAAATCA (Motif 12)

A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A
Reverse Opposite:
A C G T A C T G C G T A A C G T A G C T A C G T G T C A A C G T G C T A C T G A
p-value:1e-5
log p-value:-1.260e+01
Information Content per bp:1.615
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif5.29%
Number of Background Sequences with motif787.0
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets55.0 +/- 27.1bp
Average Position of motif in Background50.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--YTATAAATCA-
GGCCATAAATCAC
 A C G T A C G T A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-YTATAAATCA
GCCATAAATCA
 A C G T A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--YTATAAATCA
GGCCATAAATCA
 A C G T A C G T A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--YTATAAATCA
GGCCATAAATCA
 A C G T A C G T A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--YTATAAATCA
NGYCATAAAWCH
 A C G T A C G T A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.75
Offset:0
Orientation:forward strand
Alignment:YTATAAATCA
TCATCAATCA
 A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-YTATAAATCA
GCAATAAAA--
 A C G T A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--YTATAAATCA
RGCCATYAATCA
 A C G T A C G T A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:9
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:YTATAAATCA---
-DATGASTCATNN
 A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A A C G T A C G T A C G T
A C G T C A T G T C G A C G A T C A T G G C T A T A G C C G A T G T A C G C T A A G C T G A T C T G A C

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:YTATAAATCA--
CCATCAATCAAA
 A G C T C G A T T G C A A C G T T G C A C T G A T G C A G C A T T G A C T G C A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A