Information for 1-GAAGMKCCCSTGR (Motif 2)

A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A
Reverse Opposite:
A G C T A G T C C G T A A T G C A T C G A C T G A C T G G T C A A C T G A G T C G A C T A C G T A G T C
p-value:1e-13
log p-value:-3.064e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.7 +/- 25.6bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAAGMKCCCSTGR
NGAAGC--------
 A C G T A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAAGMKCCCSTGR
GGAAATCCCC----
 A C G T A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GAAGMKCCCSTGR--
-----NCACGTGACN
 A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAAGMKCCCSTGR
GGAAATTCCC----
 A C G T A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAAGMKCCCSTGR
GGAAATTCCC----
 A C G T A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAAGMKCCCSTGR
GGAAANCCCC----
 A C G T A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T

TFE3/MA0831.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAAGMKCCCSTGR-
----ATCACGTGAC
 A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T T C G A A G C T A T G C G C T A A G T C T C A G G C A T A C T G T G C A G A T C

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAAGMKCCCSTGR
---GGTCACGTGA
 A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A
A C G T A C G T A C G T T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GAAGMKCCCSTGR----
-----TCCCCTGGGGAC
 A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C

Arntl/MA0603.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GAAGMKCCCSTGR--
-----NCACGTGACN
 A C T G C G T A C G T A A C T G G T A C A C G T A G T C A G T C A T G C A T C G A C G T A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C