Information for 5-YCATAAAACCAYHTTW (Motif 7)

A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
Reverse Opposite:
C G A T C G T A G C T A C G A T C T A G G A C T C A T G C T A G A C G T A C G T A C G T G C A T C G T A C G A T C A T G T C A G
p-value:1e-13
log p-value:-3.006e+01
Information Content per bp:1.612
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.42%
Number of Background Sequences with motif247.1
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets47.2 +/- 27.2bp
Average Position of motif in Background48.6 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--YCATAAAACCAYHTTW
NCYAATAAAA--------
 A C G T A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-YCATAAAACCAYHTTW
CCAATAAAAA-------
 A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----YCATAAAACCAYHTTW
CTACCAATAAAATTCT----
 A C G T A C G T A C G T A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-YCATAAAACCAYHTTW
GTCATAAAAN-------
 A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--YCATAAAACCAYHTTW
GGTAATAAAAA-------
 A C G T A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-YCATAAAACCAYHTTW
GCAATAAAA--------
 A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--YCATAAAACCAYHTTW
NGCAATTAAA--------
 A C G T A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----YCATAAAACCAYHTTW
ACGGCCATAAAATTAAT---
 A C G T A C G T A C G T A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---YCATAAAACCAYHTTW
AAGCCATAAAA--------
 A C G T A C G T A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-YCATAAAACCAYHTTW
CCAATAAAAC-------
 A C G T A G T C G T A C G C T A A C G T C G T A G T C A C G T A G T C A G A T C G T A C C T G A G A T C G C T A C G A T G C A T C G T A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T