Information for 6-ACTGCCCTCTAGT (Motif 18)

C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T
Reverse Opposite:
G C T A A T G C G A C T T C G A T C A G C T G A C T A G C T A G A T C G G T A C G C T A A C T G A C G T
p-value:1e-10
log p-value:-2.429e+01
Information Content per bp:1.648
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.03%
Number of Background Sequences with motif248.7
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets49.7 +/- 23.3bp
Average Position of motif in Background48.8 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ACTGCCCTCTAGT-----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ACTGCCCTCTAGT-----
TAGCGCCCCCTGGTGGCCA
 A C G T C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T A C G T A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ACTGCCCTCTAGT
-CTGACCTTTG--
 C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ACTGCCCTCTAGT--------
--TGACCTAAAGTAACCTCTG
 C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ACTGCCCTCTAGT---
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ACTGCCCTCTAGT-----
--TGACCTNTAGTAACCC
 C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ACTGCCCTCTAGT
-CTGCCCGCA---
 C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ACTGCCCTCTAGT
--TGACCTYA---
 C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCCCTCTAGT
NNACTTCCTCTTNN-
 A C G T A C G T C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T
C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ACTGCCCTCTAGT
--TGACCYCT---
 C G T A T G A C C G A T C A T G T A G C G A T C G A T C G A C T A G T C A G C T C T G A A T C G C G A T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T