Information for 3-GGKCAAYYSTAGG (Motif 14)

A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T C G T A A T C G C T G A C T G A A G C T A C G T A C T G G T A C A G T C A G T C
p-value:1e-11
log p-value:-2.558e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.8 +/- 27.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGKCAAYYSTAGG----
RGGTCADNNAGAGGTCAV
 A C G T A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGKCAAYYSTAGG---
AGGTCAACTAAAGGTCA
 A C G T A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

RARA(var.2)/MA0730.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGKCAAYYSTAGG---
AGGTCATGCAAAGGTCA
 A C G T A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

GFY(?)/Promoter/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGKCAAYYSTAGG
-GGGAATTGTAGT
 A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G
A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGKCAAYYSTAGG
AGGTCA--------
 A C G T A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------GGKCAAYYSTAGG
CTCCAGGGGTCAATTGA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGKCAAYYSTAGG
TRAGGTCA--------
 A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGKCAAYYSTAGG
AGRGGTCA--------
 A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGKCAAYYSTAGG
CAAAGGTCAAGGG----
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T

Znf423/MA0116.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGKCAAYYSTAGG----
--GCACCCCTGGGTGCC
 A C T G A C T G A C T G A G T C C G T A C T G A G A C T A G C T A T G C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C