Information for 2-TTTATTGCTG (Motif 5)

A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
Reverse Opposite:
T A G C C G T A T A C G G A T C G C T A G T C A G A C T C T G A G T C A G T C A
p-value:1e-11
log p-value:-2.598e+01
Information Content per bp:1.690
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif7.68%
Number of Background Sequences with motif1397.0
Percentage of Background Sequences with motif2.85%
Average Position of motif in Targets48.4 +/- 26.0bp
Average Position of motif in Background49.9 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGCTG
TTTTATGGCTN
 A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TTTATTGCTG
TTTTATTGC--
 A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCTG
NTTTTATTACN-
 A C G T A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCTG
NTTTTATGAC--
 A C G T A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCTG
TTTTTATTGG--
 A C G T A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTGCTG-
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCTG
TTTTTATTGC--
 A C G T A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----TTTATTGCTG--
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCTG
NTTTTATTGG--
 A C G T A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTGCTG
NTTTTATTGG--
 A C G T A C G T A C G T C A G T A G C T C T G A C A G T C G A T C T A G A T G C C G A T A T C G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T