Information for 8-GGATTTAMAAGCA (Motif 16)

A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
Reverse Opposite:
C A G T C T A G G A T C C G A T A C G T A C G T C A G T C G T A C G T A G T C A G C A T A G T C G T A C
p-value:1e-8
log p-value:-2.023e+01
Information Content per bp:1.681
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif243.8
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets52.5 +/- 31.3bp
Average Position of motif in Background49.4 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GGATTTAMAAGCA
TTAGAGGGATTAACAAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGATTTAMAAGCA
-NATTCAAAT---
 A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GGATTTAMAAGCA
TGAAGGGATTAATCATC-
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGATTTAMAAGCA
GNCTATAAAAGG-
 A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGATTTAMAAGCA
CGGTTTCAAA---
 A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GGATTTAMAAGCA
TGTAGGGATTAATTGTC-
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGATTTAMAAGCA
VRGGATTARN-----
 A C G T A C G T A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGATTTAMAAGCA
NGGATTAA------
 A C G T A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGATTTAMAAGCA
GGGATTAA------
 A C G T A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GGATTTAMAAGCA
TGAGGGGGATTAACTAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G C G T A C A G T G A C T G C A T G T C A T G C A C G T A C G T A C T A G G A T C G C T A
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T A C G T A C G T