Information for 9-YWWGHCTRRS (Motif 20)

G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C
Reverse Opposite:
A T C G A G C T A G T C G T C A T A C G C A T G G A T C G C A T G C A T C T A G
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.540
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.25%
Number of Background Sequences with motif398.0
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets52.9 +/- 25.9bp
Average Position of motif in Background50.7 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:YWWGHCTRRS
-TWGTCTGV-
 G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---YWWGHCTRRS
NNACTTGCCTT--
 A C G T A C G T A C G T G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---YWWGHCTRRS----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YWWGHCTRRS----
--TGTCTGDCACCT
 G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YWWGHCTRRS
-CTGTCTGG-
 G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:YWWGHCTRRS--
--WDNCTGGGCA
 G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C A C G T A C G T
A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:YWWGHCTRRS---
--TGCCTGAGGCN
 G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C A C G T A C G T A C G T
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:YWWGHCTRRS
-AGGCCTNG-
 G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-YWWGHCTRRS
VBSYGTCTGG-
 A C G T G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:YWWGHCTRRS----
-CTGTCTGTCACCT
 G A T C C G T A C G T A C T A G G T A C A T G C C A G T T C A G T C G A A T G C A C G T A C G T A C G T A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T