Information for 3-TTATTTACCAGAC (Motif 4)

A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T C T A G C T A G A C G T G T C A C G T A C G T A C G A T C G T A C G T A
p-value:1e-13
log p-value:-3.122e+01
Information Content per bp:1.927
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.2 +/- 26.9bp
Average Position of motif in Background36.1 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:7
Orientation:reverse strand
Alignment:TTATTTACCAGAC--
-------CCAGACAG
 A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTATTTACCAGAC
-NTTTTACGAGN-
 A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTATTTACCAGAC------
--CAAATCCAGACATCACA
 A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:TTATTTACCAGAC----
-------CCAGACRSVB
 A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TTATTTACCAGAC-
----ATGCCAGACN
 A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTATTTACCAGAC--
ANATTTTACGAGNNNN
 A C G T A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

FOXO3/MA0157.2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTATTTACCAGAC
TTGTTTAC-----
 A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C
G C A T A C G T C A T G A C G T A C G T A C G T G T C A A G T C A C G T A C G T A C G T A C G T A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTATTTACCAGAC
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTATTTACCAGAC
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTATTTACCAGAC--
NAATTTTACGAGNTNN
 A C G T A C G T C G A T C G T A A C G T A C G T A C G T C G T A A G T C A G T C C G T A A C T G C G T A A G T C A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T