Information for 7-CACTTAGTCA (Motif 14)

A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
Reverse Opposite:
C A G T A T C G C G T A A G T C A C G T C T G A C G T A A T C G A C G T A C T G
p-value:1e-6
log p-value:-1.525e+01
Information Content per bp:1.864
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif80.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets45.5 +/- 24.0bp
Average Position of motif in Background55.4 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CACTTAGTCA
ACCACTTAA---
 A C G T A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CACTTAGTCA
GCACTTAA---
 A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CACTTAGTCA
ACCACTTAA---
 A C G T A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CACTTAGTCA
BCMATTAG---
 A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CACTTAGTCA
MRSCACTYAA---
 A C G T A C G T A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CACTTAGTCA-
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CACTTAGTCA
AAGCACTTAA---
 A C G T A C G T A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CACTTAGTCA----
NNAATTAGTCACGGT
 A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A A C G T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CACTTAGTCA
NNCAATTANN--
 A C G T A C G T A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CACTTAGTCA
CACTTCCTCT
 A G T C C G T A A T G C A C G T A G C T G T C A A C T G A C G T A T G C G T C A
A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T