Information for 5-TTGTAGTTCA (Motif 3)

A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
Reverse Opposite:
C A G T C T A G C T G A C G T A A G T C A G C T C G T A A T G C C G T A C T G A
p-value:1e-48
log p-value:-1.127e+02
Information Content per bp:1.841
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif6.52%
Number of Background Sequences with motif82.0
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets52.2 +/- 26.9bp
Average Position of motif in Background54.9 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTGTAGTTCA
NNTGTGGTTT-
 A C G T A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T

GFY(?)/Promoter/Homer

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TTGTAGTTCA
GGGAATTGTAGT---
 A C G T A C G T A C G T A C G T A C G T A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTGTAGTTCA
NNHTGTGGTTWN
 A C G T A C G T A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:4
Score:0.60
Offset:-12
Orientation:reverse strand
Alignment:------------TTGTAGTTCA
GCMTBCTGGGAGTTGTAGTY--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTGTAGTTCA
GCTGTGGTTT-
 A C G T A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTGTAGTTCA
CTGTGGTTTN
 A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTGTAGTTCA
ATCAAGGTCA
 A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTGTAGTTCA
GTCTGTGGTTT-
 A C G T A C G T A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGTAGTTCA
TTTGCGGTTT-
 A C G T A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A
C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGTAGTTCA------
NTTTTAGTTAACNNAGN
 A C G T A G C T G A C T A T C G C G A T C T G A A C T G A C G T A G C T A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G