Information for 13-CACGCTAGGT (Motif 12)

A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T
Reverse Opposite:
C G T A A T G C A G T C C G A T C T G A C T A G A T G C A C T G A G C T A C T G
p-value:1e-12
log p-value:-2.829e+01
Information Content per bp:1.864
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.6 +/- 25.0bp
Average Position of motif in Background39.1 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CACGCTAGGT
CACGCA----
 A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CACGCTAGGT
TBGCACGCAA---
 A C G T A C G T A C G T A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACGCTAGGT--
GTCACGCTCNCTGA
 A C G T A C G T A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T A C G T A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

Znf423/MA0116.1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CACGCTAGGT---
GCACCCCTGGGTGCC
 A C G T A C G T A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T A C G T A C G T A C G T
A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C

Hes1/MA1099.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CACGCTAGGT
GGCACGCGTC--
 A C G T A C G T A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CACGCTAGGT--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CACGCTAGGT----
----VCAGGTRDRY
 A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CACGCTAGGT
CAAGCTT---
 A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CACGCTAGGT
CCTGCTGAGH
 A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CACGCTAGGT--
AAGGTCACGAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A G T A C A T C G A G T C A G C T C G T A A C T G A T C G A C G T A C G T A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A