Information for 1-GGGTAATGCC (Motif 11)

A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C
Reverse Opposite:
C T A G A C T G A G T C C T G A A C G T A C G T C G T A A G T C A G T C A G T C
p-value:1e-6
log p-value:-1.455e+01
Information Content per bp:1.938
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.0 +/- 22.0bp
Average Position of motif in Background56.9 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGGTAATGCC-
GGGGGAATCCCC
 A C G T A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB2/MA0778.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGGTAATGCC--
AGGGGAATCCCCT
 A C G T A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGGTAATGCC--
GGGAAATCCCCN
 A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C A C G T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGGTAATGCC-----
AGGCTAATCCCCAANG
 A C G T A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGGTAATGCC-
-GGAAATTCCC
 A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GGGTAATGCC-
---TAATCCCN
 A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C A C G T
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGGTAATGCC
GGGGATTTCC
 A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGGTAATGCC-
-GGAAATTCCC
 A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C A C G T
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGGTAATGCC-
-GGAAANCCCC
 A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGGTAATGCC
-GKTAATGR-
 A C T G A C T G A C T G A C G T C G T A C G T A A G C T C T A G A G T C A G T C
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T