Information for 6-GYGCATTTAAGGC (Motif 9)

T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C
Reverse Opposite:
A C T G A G T C A G T C A G C T A G C T T C G A C G T A G T C A A G C T T A C G T A G C C T A G A T G C
p-value:1e-12
log p-value:-2.826e+01
Information Content per bp:1.704
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets59.0 +/- 27.3bp
Average Position of motif in Background40.7 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GYGCATTTAAGGC-
--TGATTTATGGCC
 T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GYGCATTTAAGGC-
--CCATATATGGNA
 T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T
A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GYGCATTTAAGGC
--GCACTTAA---
 T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C
A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GYGCATTTAAGGC-
-NTGATTTATGGCC
 T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GYGCATTTAAGGC-
--CCTTTTATAGNC
 T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Hmx1/MA0896.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GYGCATTTAAGGC--
ACAAGCAATTAATGAAT
 A C G T A C G T T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GYGCATTTAAGGC--
ACAAGCAATTAATGAAT
 A C G T A C G T T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

SRF/MA0083.3/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GYGCATTTAAGGC--
TGACCATATATGGTCA
 A C G T T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GYGCATTTAAGGC-
--TGATTTATGGCC
 T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GYGCATTTAAGGC-
--DGWTTTATGRCN
 T A C G G A T C A T C G A T G C C T G A A C G T G A C T A G C T T C G A C T G A C T A G T C A G A G T C A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C