Information for 2-AAHTCTGACCHATAAA (Motif 5)

C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A
Reverse Opposite:
A C G T A G C T A G C T C G T A A C G T C G A T C T A G T A C G A G C T A T G C C G T A A C T G G T C A C T A G C G A T A C G T
p-value:1e-14
log p-value:-3.442e+01
Information Content per bp:1.729
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.4 +/- 23.7bp
Average Position of motif in Background88.2 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.70
Offset:8
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA--
--------CCAATAAAAA
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.69
Offset:7
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA-
-------NCYAATAAAA
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.69
Offset:8
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA--
--------CCAATAAAAC
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.69
Offset:8
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA--
--------CCAATAAAAA
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.69
Offset:7
Orientation:reverse strand
Alignment:AAHTCTGACCHATAAA-
-------CCYMATAAAA
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.69
Offset:6
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA-
------AAGCCATAAAA
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.69
Offset:8
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA-
--------GCAATAAAA
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.67
Offset:7
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA---
-------NGYCATAAAWCH
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.66
Offset:7
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA--
-------GGTAATAAAAA
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AAHTCTGACCHATAAA-----
-----AGAGCCATAAAATTCG
 C G T A C G T A G A C T A C G T G T A C C G A T A T C G C T G A A T G C A G T C G C T A C G T A A C G T C T G A C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G