Information for 11-AGAGGGCAGA (Motif 30)

C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A
Reverse Opposite:
A G C T A T G C A G C T A C T G G A T C A G T C A G T C A C G T A G T C G C A T
p-value:1e-8
log p-value:-1.851e+01
Information Content per bp:1.791
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif31.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets51.2 +/- 24.5bp
Average Position of motif in Background50.9 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAGGGCAGA
TRAGGTCA--
 C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGAGGGCAGA
AGRGGTCA--
 C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCAGA
CAAAGGTCAG-
 A C G T C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGAGGGCAGA
-AAGGTCAC-
 C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCAGA----
ARGAGGMCAAAATGW
 A C G T C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A A C G T A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCAGA---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCAGA--
CAAAGGTCAAGGG
 A C G T C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCAGA
TNNGGGCAG-
 C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGAGGGCAGA
--AGGTCA--
 C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCAGA--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G C T A G C A T G G T A C C T G A A T C G C T G A A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G