Information for 1-CCWTAWAAGGVAA (Motif 1)

A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
Reverse Opposite:
G A C T A C G T A G T C A G T C A G T C C G A T C G A T C G A T C A G T C G T A C G T A C T A G A C T G
p-value:1e-25
log p-value:-5.766e+01
Information Content per bp:1.679
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.80%
Number of Background Sequences with motif129.7
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets50.5 +/- 19.2bp
Average Position of motif in Background49.8 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCWTAWAAGGVAA
CCATATATGGNA-
 A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CCWTAWAAGGVAA
TTCCATATATGGAA-
 A C G T A C G T A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A A C G T

SRF/MA0083.3/Jaspar

Match Rank:3
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CCWTAWAAGGVAA
TGACCATATATGGTCA
 A C G T A C G T A C G T A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--CCWTAWAAGGVAA
GNCTATAAAAGG---
 A C G T A C G T A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CCWTAWAAGGVAA
CCATATATGG---
 A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T

PB0184.1_Tbp_2/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCWTAWAAGGVAA
GNNCGCTTAAATCGG--
 A C G T A C G T A C G T A C G T A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCWTAWAAGGVAA
--NNATAAGGNN-
 A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCWTAWAAGGVAA--
GTATAAAAGGCGGGG
 A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCWTAWAAGGVAA--
GTATAAAAGGCGGGG
 A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCWTAWAAGGVAA
AAGCCATAAAA-----
 A C G T A C G T A C G T A G T C A G T C G C A T C G A T G T C A C G T A C G T A G C T A A C T G T C A G T C A G T G C A C T G A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T